GgaEX1015547 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9839516-9854198:+
Coord C1 exon
chr15:9839516-9839669
Coord A exon
chr15:9846822-9847002
Coord C2 exon
chr15:9854093-9854198
Length
181 bp
Sequences
Splice sites
3' ss Seq
ATCCTTGCTTTTTTCACCAGCTC
3' ss Score
7.42
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AGATACCTGAAGTTCCCAGAGGATGTGAAAGTTAGTAGTGAATTTCTTGATCTGATCCAGAGCTTGCTTTGTGGACAAAAGGAAAGGCTGGGTTATGAGGGACTCTGCTGCCATCCGTTTTTCTCTAAAATTGACTGGAATAATATCCGTAACT
Seq A exon
CTCCTCCCCCCTTCGTTCCTACTCTCAAGTCTGATGATGACACCTCAAATTTTGATGAACCAGAGAAGAATTCGGGGGTTTTATCCTCTACACGGCAGTTGAACCCGGCAGGTTTCTCGGGTGAAGATTTGCCTTTTGTAGGGTTTTCATTCATCAAGGCATTGGGGACCCTCAGATCAGA
Seq C2 exon
ATCTGTGCTTTCAAGTGTGGATTCTCCAGCAAAGGTCAGCTCCATGGAAAAGAAACTTCTTCTCAAGAGCAAAGAACTCCAAGACGCCCAGGACAAGTGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'12-16,'12-13,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.448 C2=0.194
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(15.2=76.9)
A:
PF0043319=Pkinase_C=WD(100=75.4)
C2:
PF0396210=Mnd1=PU(14.3=41.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAAGTTCCCAGAGGATGT
R:
CTTGTGACACTTGTCCTGGGC
Band lengths:
256-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]