GgaEX1015547 @ galGal4
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9575054-9589736:+
Coord C1 exon
chr15:9575054-9575207
Coord A exon
chr15:9582360-9582540
Coord C2 exon
chr15:9589631-9589736
Length
181 bp
Sequences
Splice sites
3' ss Seq
ATCCTTGCTTTTTTCACCAGCTC
3' ss Score
7.42
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AGATACCTGAAGTTCCCAGAGGATGTGAAAGTTAGTAGTGAATTTCTTGATCTGATCCAGAGCTTGCTTTGTGGACAAAAGGAAAGGCTGGGTTATGAGGGACTCTGCTGCCATCCGTTTTTCTCTAAAATTGACTGGAATAATATCCGTAACT
Seq A exon
CTCCTCCCCCCTTCGTTCCTACTCTCAAGTCTGATGATGACACCTCAAATTTTGATGAACCAGAGAAGAATTCGGGGGTTTTATCCTCTACACGGCAGTTGAACCCGGCAGGTTTCTCGGGTGAAGATTTGCCTTTTGTAGGGTTTTCATTCATCAAGGCATTGGGGACCCTCAGATCAGA
Seq C2 exon
ATCTGTGCTTTCAAGTGTGGATTCTCCAGCAAAGGTCAGCTCCATGGAAAAGAAACTTCTTCTCAAGAGCAAAGAACTCCAAGACGCCCAGGACAAGTGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'16-19,'16-16,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.475 C2=0.194
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(15.2=76.9)
A:
PF0043319=Pkinase_C=WD(100=75.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAAGTTCCCAGAGGATGT
R:
CTTGTGACACTTGTCCTGGGC
Band lengths:
256-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]