RnoEX0021388 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46414605-46452522:-
Coord C1 exon
chr12:46452369-46452522
Coord A exon
chr12:46430986-46431169
Coord C2 exon
chr12:46414605-46414710
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTCTTTTAACCAGCTC
3' ss Score
7.61
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CGGTTTTTGAAGTTCCCGGATGACCCCAAAGTTAGCAGTGAGCTCCTTGATCTGATTCAGAGTTTGCTGTGTGTCCAGAAAGAGAGACTGAAGTTCGAGGGTCTCTGTTGCCACCCTTTCTTTGCCAGAACCGACTGGAATAACATCCGGAACT
Seq A exon
CTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGACGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCTGAGCCCTTCGGGTTTCTCGGGCGAAGAGCTGCCCTTTGTGGGGTTTTCATACAGCAAGGCACTGGGGTATCTTGGTAGATCTGA
Seq C2 exon
GTCTGTTGTGTCGGGTCTGGACTCCCCTGCCAAGATTAGCTCCATGGAAAAGAAACTTCTCATCAAAAGCAAAGAGCTGCAAGACTCTCAGGACAAGTGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.309 C2=0.208
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(15.2=76.9)
A:
PF0043319=Pkinase_C=WD(100=75.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAGTTCCCGGATGACCC
R:
TGTCCTGAGAGTCTTGCAGCT
Band lengths:
244-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]