DreEX0002772 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2261754-2318179:-
Coord C1 exon
chr5:2318026-2318179
Coord A exon
chr5:2301049-2301238
Coord C2 exon
chr5:2261754-2261859
Length
190 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGTGGTCTCCTCCAGCGC
3' ss Score
9.89
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CGCTTTCTGAAGTTCCCAGAGGAGCCCAAAGCCAGCGCTGCATTTATGGACCTCCTCCAGAGTTTATTATGTGGATCTGTAGAGCGTCTTGGATATGAAGGCCTGCGCTCACATCCCTTCTTCTCCTCTGTTGACTGGACAAACCTGAGACACG
Seq A exon
CGCTCCCTCCGTTTGTTCCGTCTCTGCGTTCTGAAGATGACGCCTGTAATTTCGAGGCTCCGGAGCGACCCCCCCGCCCCGCCACCGCCGCTGCCCAGCCAGAGCACCCTCGCTCAGGCTTCCACGGCCGAGACCTGCCCTTTGTAGGGTGGTGCTTCAGTCGGGCCCTCACAGCACTGGCCAAGTCTGA
Seq C2 exon
GTCGGTCGGCGCAGGACTCAACTCTCCTGCCAAGACCAACTCCATGGAAAAAAAACTGCACCTCAAAAGCAAAGAACTGCAAGACACTCAAGACAAATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856-'12-15,'12-12,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.391 C2=0.917
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(15.1=76.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGTTCCCAGAGGAGCC
R:
TGTCTTGAGTGTCTTGCAGTTCT
Band lengths:
244-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]