BtaEX0009239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55355013-55357470:+
Coord C1 exon
chr17:55355013-55355062
Coord A exon
chr17:55356188-55356193
Coord C2 exon
chr17:55357346-55357470
Length
6 bp
Sequences
Splice sites
3' ss Seq
AACACTTTTCTTCCCATCAGCAA
3' ss Score
6.89
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTAATACTGATACTCAGGCAGAAGAGGATGAAAGAGCCCAGGAGAGTCAG
Seq A exon
CAAATG
Seq C2 exon
ATTGACTTCCTCAATTCAGTAATAGTGGACCTTCAGAGGAAGAATCAGGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAATGGGAACGGGGACGACCTGAACAACTACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=1.000 C2=0.595
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000022319fB1765
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAGCCCAGGAGAGTCA
R:
GCTGCTTCTGACATCATCTCCA
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development