RnoEX0021795 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38447580-38450414:+
Coord C1 exon
chr12:38447580-38447629
Coord A exon
chr12:38448790-38448795
Coord C2 exon
chr12:38450290-38450414
Length
6 bp
Sequences
Splice sites
3' ss Seq
AACACTTTCCCTCCCATCAGCAA
3' ss Score
7.41
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTAACACTGATGTTCAGACAGAAGAGGATGAGAGAGCCCAGGAGAGTCAG
Seq A exon
CAAATG
Seq C2 exon
ATTGATTTCCTCAACTCGGTAATAGTGGACCTTCAAAGAAAGAACCAAGACCTCAAGATGAAGGTGGAGATGATGTCTGAAGCTGCGCTGAACGGCAACGGGGAGGATCCGAACAGTTACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.597
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGCCCAGGAGAGTCAG
R:
CGCAGCTTCAGACATCATCTCC
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]