GgaEX0029079 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5867355-5868473:-
Coord C1 exon
chr15:5868424-5868473
Coord A exon
chr15:5867913-5867918
Coord C2 exon
chr15:5867355-5867479
Length
6 bp
Sequences
Splice sites
3' ss Seq
CAATGCTTTCTTCTGATCAGCAA
3' ss Score
4.48
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GTGACATAGCTGCTAATCTACTTCAAGATGAAAGTGCAGAAGATAAACAG
Seq A exon
CAAGAG
Seq C2 exon
ATTGACTTCCTGAACTCAGTGATAGTAGATCTGCAAAGGAGAAATGAAGAATTAAACTTGAAAATACAGAGAATGTGTGAAGCAGCCCTCAATGGCAATGAAGAAGAGACAATCAACTATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTAATCTACTTCAAGATGA
R:
TCTTCATTTCTCCTTTGCAGATCT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]