BtaEX0009541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14931655-14934801:-
Coord C1 exon
chr9:14934672-14934801
Coord A exon
chr9:14932101-14932243
Coord C2 exon
chr9:14931655-14931784
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTTCATTTCAACAGTAC
3' ss Score
8.28
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
TTTTATGTGAGCCGATTGGAAAGGAGCACGGTCCTGAAAGATCTGAAGCCTGAAACTGAATATGTTGTCAATGTGTATTCTGTAGTGGAAGATGAATACAGTGAGCCTCTGAAGGGCACAGAAAAAACAT
Seq A exon
TACCAGTGCCTGTGGTCAGCCTGAACATTTACAACATTGGCTCAACCACCATGCACGTGCAGTGGCAGCCAGTGGGGGGCGCTACCGGCTACACTGTGACCTACGAACCCATCAATGCCACAGTTCCGACCAAGCCCAAAGAG
Seq C2 exon
ATGCGCCTGGAGCCGACAGTGAATGATGTGCAGCTGAGTGACCTCTTCCCCAACACCGAGTATGCAGTTACAGTCCAGGCTGTCCTGCATGACCTCACCAGTGAACCCGTCACAGCAAGGGAAGTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.250 C2=0.318
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=93.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGAAAGGAGCACGGTCC
R:
GGTGACTTCCCTTGCTGTGAC
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development