MmuEX6067471 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79672904-79674186:-
Coord C1 exon
chr9:79674057-79674186
Coord A exon
chr9:79673357-79673499
Coord C2 exon
chr9:79672904-79673033
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCATATTTTCCTAGTGC
3' ss Score
8.07
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTTTATGTGAGTCGACTAGACACTAGCACAGTGCTGAAGGACCTGAAGCCTGAGACTGACTATGTGGTGAACGTGTACTCTGTGGTTGAAGATGAGTACAGTGAGCCTCTGAAGGGCACAGAGAAAACCC
Seq A exon
TGCCAGTCCCTGTAGTTAGCCTGAATATTTATGATGTTGGCCCCACCACTATGCATGTGCAATGGCAGCCTGTGGGAGGAGCTACTGGCTACACCGTATCATACCAACCTACTCGATCTCCAGAAGGAACAAAGCCCAAAGAG
Seq C2 exon
ATGCGCGTGGGGCCAACAGTGAATGATGTGCAGCTGACTGGCCTCCTTCCTAACACAGAGTATGAGGTCACCGTCCAGGCCGTCCTGTATGACCTCACTAGTGAACCTGCCAAAGCTCGGGAAGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'35-32,'35-31,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.375 C2=0.386
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(55.6=93.8)
C2:
PF0004116=fn3=PD(42.0=77.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTAGACACTAGCACAGT
R:
ATGTGACTTCCCGAGCTTTGG
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types