RnoEX6036660 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87110347-87111566:-
Coord C1 exon
chr8:87111437-87111566
Coord A exon
chr8:87110781-87110923
Coord C2 exon
chr8:87110347-87110476
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTCATACTTTCCTAGTGC
3' ss Score
7.87
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTTTACGTGAGTCGACTAGAAACTAGCACAGTGTTGAAGGATCTGAAGCCCGAGACTGAGTATGTGGTGAACGTGTATTCTGTGGTTGAAGATGAGTACAGTGAGCCTCTGAAGGGCACAGAGAAAACCT
Seq A exon
TGCCAGTCCCTGTAGTTAGCCTGAATATTTATGATATTGGCCCCACCACTATGCATGTGCAATGGCAGCCTGTGGGAGGAGCTACTGGCTACACTGTATCATACCAACCTACAAGATCTCCAGAAGGAACAAAGCCCAAAGAG
Seq C2 exon
ATGCGTGTGGGGCCCACAGTGAATGATGTGCAGCTGACCGGCCTCCTTCCTAACACAGAGTATGAGGTCACCGTCCAGGCAGTCTTGCATGACCTCACTAGTGAACCTGCCAAAGCTCGGGAAGCCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'38-44,'38-43,39-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.375 C2=0.636
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=93.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGTCGACTAGAAACTAGCAC
R:
CGAGCTTTGGCAGGTTCACTA
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]