GgaEX6031708 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80256316-80258094:+
Coord C1 exon
chr3:80256316-80256445
Coord A exon
chr3:80257550-80257695
Coord C2 exon
chr3:80257965-80258094
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTTTTTTATGACAGATC
3' ss Score
8.85
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTTTATGTAAGTAGGATGGAAACTACAACAGTTTTGAAAGATCTGACACCTGAAACAGAATACATTGTTAACGTGTTTTCTGTGGTAGAAGACGAAAGCAGTGAACCTCTAATCGGCAGGGAAATAACTT
Seq A exon
ATCCACTGTCTTCAGTTAGAAACCTGAATGTTTATGACATTGGATCAACTTCTATGAGAGTGAGATGGGAACCTGTCAATGGAGCTACTGGTTATTTGTTAACATATGAGCCTGTGAATGCCACAGTCCCAACCACAGAGAAAGAG
Seq C2 exon
ATGCGTGTTGGACCATCAGTGAATGAGGTTCAGCTGGTAGACCTCATCCCCAATACTGAGTACACTTTAACAGCTTATGTATTGTATGGTGATATCACCAGTGACCCGCTCACCTCGCAGGAAGTGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'44-37,'44-36,45-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.122 C2=0.250
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.8=79.5)
A:
PF0004116=fn3=PU(54.9=91.8)
C2:
PF0004116=fn3=PD(42.7=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAGGATGGAAACTACAACAGT
R:
ATGTCACTTCCTGCGAGGTG
Band lengths:
252-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]