BtaEX0015091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66972852-66973247:+
Coord C1 exon
chr3:66972852-66972901
Coord A exon
chr3:66972994-66973065
Coord C2 exon
chr3:66973190-66973247
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTTTTCTTACTAGTAA
3' ss Score
8.02
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GTCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTTA
Seq A exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAACAGGAATCTGGATGTAAAATACAGATAGCTCCTG
Seq C2 exon
ATAGTGGTGGCCTTCCAGAAAGGTCTTGTATGTTAACTGGAACACCCGAGTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-'4-9,'4-8,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.773 C2=0.750
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAATACAAAGTTCCAGATGG
R:
ACAGACTCGGGTGTTCCAGTT
Band lengths:
95-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development