MmuEX6074751 @ mm10
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152217835-152218270:+
Coord C1 exon
chr3:152217835-152217884
Coord A exon
chr3:152217976-152218047
Coord C2 exon
chr3:152218213-152218270
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTACCTTAACTAGTAA
3' ss Score
5.14
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
ATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTA
Seq A exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGAATACAGCAGGAATCTGGATGCAAGATACAGATAGCACCTG
Seq C2 exon
ATAGTGGTGGCCTACCAGAAAGGTCTTGTATGCTAACTGGAACACCTGAATCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'15-14,'15-13,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=0.551 C2=0.767
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGACAGAAGAATACAAAGTCCCA
R:
TGGACAGATTCAGGTGTTCCAG
Band lengths:
103-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types