GgaEX6044515 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17795115-17795618:+
Coord C1 exon
chr8:17795115-17795164
Coord A exon
chr8:17795256-17795327
Coord C2 exon
chr8:17795561-17795618
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTATTTTCTTTCTACAAGTCA
3' ss Score
4.08
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GTCTGTGATGACAGAGGAGTACAAAGTTCCAGATGGAATGGTTGGATTTA
Seq A exon
TCATCGGCAGAGGCGGAGAGCAGATCTCACGCATACAGCAAGAGTCAGGATGTAAAATACAGATTGCACCTG
Seq C2 exon
ATAGTGGGGGCCTGCCTGAAAGATCATGCATGCTAACTGGAACCCCAGAATCTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'12-9,'12-8,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.480 C2=0.750
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=86.7)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGACAGAGGAGTACAAAGT
R:
TGAACAGATTCTGGGGTTCCA
Band lengths:
105-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]