DreEX0033765 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8854179-8855653:+
Coord C1 exon
chr2:8854179-8854225
Coord A exon
chr2:8854390-8854461
Coord C2 exon
chr2:8855596-8855653
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGCTTAACTCTTGTTTTCAGTCA
3' ss Score
6.59
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCTGTATCTGAAGAGTTCAAGGTCCCAGATGGCATGGTTGGCTTCA
Seq A exon
TCATTGGAAGAGGAGGAGAACAGATTTCAAGACTGCAACAGGAATCTGGCTGCAAAATACAGATTGCTCCTG
Seq C2 exon
ACAGTGGTGGTATGCCTGATAGGTCAGTGACGTTAACTGGTTCACCAGATGCAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.800 C2=0.900
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=76.5)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTATCTGAAGAGTTCAAGGTCCC
R:
ATGATTGCATCTGGTGAACCA
Band lengths:
103-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]