RnoEX6011949 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257432840-257433283:+
Coord C1 exon
chr2:257432840-257432889
Coord A exon
chr2:257432983-257433054
Coord C2 exon
chr2:257433226-257433283
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTCCCTTAACTAGTAA
3' ss Score
7.51
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTTA
Seq A exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAGCAGGAATCTGGATGCAAAATACAGATAGCTCCTG
Seq C2 exon
ATAGTGGTGGCCTTCCAGAAAGGTCTTGTATGCTAACGGGAACGCCTGAATCTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.613 C2=0.800
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAATACAAAGTTCCAGATGG
R:
TGAACAGATTCAGGCGTTCCC
Band lengths:
98-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]