HsaEX6031731 @ hg38
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77966694-77967098:-
Coord C1 exon
chr1:77967049-77967098
Coord A exon
chr1:77966884-77966955
Coord C2 exon
chr1:77966694-77966751
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTCTAACTAGTAA
3' ss Score
7.5
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTCA
Seq A exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAACAGGAATCTGGATGCAAAATACAGATAGCTCCTG
Seq C2 exon
ACAGTGGTGGCCTTCCAGAAAGGTCCTGTATGTTAACTGGAACACCTGAATCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'12-11,'12-9,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=0.560 C2=0.767
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAATACAAAGTTCCAGATGG
R:
TGGACAGATTCAGGTGTTCCAG
Band lengths:
98-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains