BtaEX0015981 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95876852-95882166:-
Coord C1 exon
chr11:95882017-95882166
Coord A exon
chr11:95881368-95881463
Coord C2 exon
chr11:95876852-95876941
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATACTTTCCTCAATTTGCAGAGA
3' ss Score
8.89
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCCGCCGCGAACACGGAGAGCAGCCGTGCCCAGCAGCAGGCCCTCGCTCTGGAGCAGCAGCAGGCGGAGCGGATCCACGCGCTGGAGACCCAGCTGGCGGGCCTGGGGAGAGCGCGGGTGGCCGACCTGACAGCCACAGAGCAGGAGCTG
Seq A exon
AGAAAGCTGGAGCAAGAAAATGCAGCCCTTAAAGAAAGTAAGAATGAATGTGAATGTTCTTTACAGCATCACCAGCTTGAACTAAAGAAGCTGAAG
Seq C2 exon
GAAGAATGGAGCCAAAGAGAAATCGTGAGTGTGGCAATGGCTCAAGCCCTGGAGGAGGTGCGGAAGCAGAGGGAAGAGTTGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.406 C2=0.267
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PU(22.0=72.0)
A:
PF045827=Reo_sigmaC=FE(18.9=100)
C2:
PF045827=Reo_sigmaC=FE(17.7=100)
Main Skipping Isoform:
ENSBTAT00000020327fB3051
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAACACGGAGAGCAG
R:
TGCCACACTCACGATTTCTCT
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development