MmuEX6100995 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39024209-39034210:-
Coord C1 exon
chr2:39034061-39034210
Coord A exon
chr2:39033157-39033252
Coord C2 exon
chr2:39024209-39024298
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTGCTCAATTTACAGCTA
3' ss Score
8.29
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATCACTACAAACCAGGAGAACAGCCTTTCCCAGCAGCAGGTTCTTGCCCTGGAACAGCATTGCAGGGAGCGCATCCATGCACTGGAGGCCCAAATTGAAGCTCTGGAACAAACACGGGTAGCTGACCAGATAGCCTCAGAGCAGGGAATG
Seq A exon
CTACAACTGCAGCAGGAAAATGTGGCCCTTAAAGAAAGCAGAAATGAATGTGAACATTCCTTACAACATCACCAATTGGAACTAAAGAAACTAAAG
Seq C2 exon
GATGAATGGAGCCAAAGAGAAATTGTGAGTGTAGCAATGGCTCAAGCCCTGGAGGAGGTGCGGAAACAGAGAGAAGAGTTCCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.469 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGCATTGCAGGGAG
R:
TCTCTGTTTCCGCACCTCCTC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types