HsaEX0027938 @ hg19

Exon Skipping

Gene

ENSG00000136935 | GOLGA1

Description

golgin A1 [Source:HGNC Symbol;Acc:4424]

Coordinates

chr9:127652668-127661757:-

Coord C1 exon

chr9:127661608-127661757

Coord A exon

chr9:127660828-127660923

Coord C2 exon

chr9:127652668-127652757

Length

96 bp

Sequences

Splice sites

3' ss Seq

GTGTTCTTCTGAATTGGCAGAGA

3' ss Score

5.38

5' ss Seq

AAGGTATTT

5' ss Score

7.64

Exon sequences

Seq C1 exon

GCTGCCGCCAACCAGGAGAGCAGCCATGTGCAGCAGCAGGCCCTTGCTCTGGAGCAGCAGTTCTTGGAGCGCACCCAGGCGCTAGAAGCCCAGATAGTGGCCCTGGAGAGAACGCGGGCAGCTGACCAGACCACCGCAGAGCAAGGGATG

Seq A exon

AGACAACTGGAGCAAGAAAATGCAGCCCTTAAAGAATGCAGGAATGAATATGAACGTTCTTTACAAAATCACCAATTTGAACTAAAGAAGCTGAAG

Seq C2 exon

GAAGAATGGAGCCAAAGAGAAATTGTGAGCGTGGCCATGGCTCAAGCCCTGGAGGAGGTGCGGAAGCAAAGGGAAGAGTTCCAGCAACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136935-'22-22,'22-21,23-22

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.380 A=0.375 C2=0.000

Domain overlap (PFAM):

C1:

PF078886=CALCOCO1=PD(4.8=50.0),PF0157614=Myosin_tail_1=PD(1.4=14.3),PF083176=Spc7=PD(7.3=78.6),PF045827=Reo_sigmaC=PD(6.7=71.4),PF0192313=Cob_adeno_trans=PD(6.0=50.0)

A:

NO

C2:

NO

Main Inclusion Isoform:

ENSP00000362656