GgaEX6015629 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9571034-9571963:+
Coord C1 exon
chr17:9571034-9571186
Coord A exon
chr17:9571407-9571502
Coord C2 exon
chr17:9571874-9571963
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGGCAGTCTTTATTTTACAGAGC
3' ss Score
5.09
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CAAATGGATGTAGAAAATGAAAGAAGTAAACTACAACAGCAGGTTTTAAGTGAGAAACATCAGTATGAACAGAAGATTTCTGAGCTAGAGTCTCAAATTGCTGCTCTTCAAACAGCTTGGGAATTTGATAAAACAGCTGCTCAGCACAAGATA
Seq A exon
AGCCAGCTGGAAAAGGAAAATGAAAATCTTAATGGAAGCAGAGAAGAGTATGAGAGTTCTTTAAAAAAGCAAGAATCTGTTCTGAACAAACTAAAG
Seq C2 exon
AAAGAATTGAGCAGCAGAGAGACTGTCAATACTGAAATTGCCAACACATTGGAAGAAACAGAAAAACAAAAGGACAAATTGCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'20-28,'20-27,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.781 C2=0.833
Domain overlap (PFAM):
C1:
PF128082=Mto2_bdg=PU(62.8=52.9)
A:
PF128082=Mto2_bdg=PD(32.6=43.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGCAGGTTTTAAGTGAGA
R:
TGTGTTGGCAATTTCAGTATTGAC
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]