HsaEX0027938 @ hg38
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124890389-124899478:-
Coord C1 exon
chr9:124899329-124899478
Coord A exon
chr9:124898549-124898644
Coord C2 exon
chr9:124890389-124890478
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTCTGAATTGGCAGAGA
3' ss Score
5.38
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCTGCCGCCAACCAGGAGAGCAGCCATGTGCAGCAGCAGGCCCTTGCTCTGGAGCAGCAGTTCTTGGAGCGCACCCAGGCGCTAGAAGCCCAGATAGTGGCCCTGGAGAGAACGCGGGCAGCTGACCAGACCACCGCAGAGCAAGGGATG
Seq A exon
AGACAACTGGAGCAAGAAAATGCAGCCCTTAAAGAATGCAGGAATGAATATGAACGTTCTTTACAAAATCACCAATTTGAACTAAAGAAGCTGAAG
Seq C2 exon
GAAGAATGGAGCCAAAGAGAAATTGTGAGCGTGGCCATGGCTCAAGCCCTGGAGGAGGTGCGGAAGCAAAGGGAAGAGTTCCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PD(6.7=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGCAGTTCTTGGAG
R:
AACTCTTCCCTTTGCTTCCGC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development