GgaEX6015629 @ galGal3
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10292027-10292956:+
Coord C1 exon
chr17:10292027-10292179
Coord A exon
chr17:10292400-10292495
Coord C2 exon
chr17:10292867-10292956
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGGCAGTCTTTATTTTACAGAGC
3' ss Score
5.09
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CAAATGGATGTAGAAAATGAAAGAAGTAAACTACAACAGCAGGTTTTAAGTGAGAAACATCAGTATGAACAGAAGATTTCTGAGCTAGAGTCTCAAATTGCTGCTCTTCAAACAGCTTGGGAATTTGATAAAACAGCTGCTCAGCACAAGATA
Seq A exon
AGCCAGCTGGAAAAGGAAAATGAAAATCTTAATGGAAGCAGAGAAGAGTATGAGAGTTCTTTAAAAAAGCAAGAATCTGTTCTGAACAAACTAAAG
Seq C2 exon
AAAGAATTGAGCAGCAGAGAGACTGTCAATACTGAAATTGCCAACACATTGGAAGAAACAGAAAAACAAAAGGACAAATTGCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=0.781 C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGCAGGTTTTAAGTGAGA
R:
TGTGTTGGCAATTTCAGTATTGAC
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]