DreEX0035460 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41471179-41474836:-
Coord C1 exon
chr8:41474684-41474836
Coord A exon
chr8:41474503-41474598
Coord C2 exon
chr8:41471179-41471268
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTGATTCTCTTAAGCGG
3' ss Score
5.91
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
CAGGTGGAGTGGTCAGAGGAGCGAGAGCGGCTACAGCAGCAGGTGTCCACACAAAGACAGAGAGGCCTGGAGAAAACAGCCAGACTGGAGGAAGAGCTGCTTGCACTACAGAGAGACAGAGAAACGGAGGCCAACAAATATCAGGACAACCTG
Seq A exon
CGGTTACTGGAGGAGGAAAAAAACTCCCTTTTGAGGAGCAAAGCGGAGACTGATAGCACTGTAGAGAGTCTGACGGCAGAACTGGAGCAGTCTAGA
Seq C2 exon
GCGGAGATGAGCAGCAGACAGACAGTCAGTGTTGAAATTGCCAAAGCTTTGGAGGAAACCAGAAAACAGAGGGAAGAACTCCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.844 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGCCTGGAGAAAACAGC
R:
TGCTGGAGTTCTTCCCTCTGT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]