RnoEX0039156 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23317448-23326264:-
Coord C1 exon
chr3:23326115-23326264
Coord A exon
chr3:23325550-23325645
Coord C2 exon
chr3:23317448-23317537
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTGCTCAATTTACAGCGG
3' ss Score
8.15
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATCACTACAAACCAAGAGAACAACCTTTCCCAACAGCAGGTTCTTGCCCTGGAGCAACATTGCAGGGAGCGCATCCATGCACTGGAGGCCCAAATTGAAGCTCTGGAACAAACACGGGCGGCTGACCAGATAGCCTCTGAGCAGGGAATG
Seq A exon
CGGCAACTGCAGCAGGAAAATGTGGCCCTTAAAGAAAGCAGAGATGAGTGTATACAGTCCTTACAACATCACCAATTGGAACTAAAGAAACTCAAG
Seq C2 exon
GATGAATGGAACCAAAGAGAAATTGTGAGTGTGGCAATGGCTCAAGCCCTGGAGGAGGTGCGGAAACAGAGAGAAGAGTTCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-'19-23,'19-21,20-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.125 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTTTCCCAACAGCAGGT
R:
CTTGAGCCATTGCCACACTCA
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]