BtaEX0017170 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001252 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr23:44166025-44176359:-
Coord C1 exon
chr23:44170415-44176359
Coord A exon
chr23:44166914-44167047
Coord C2 exon
chr23:44166025-44166200
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCCCTTTCAGAGA
3' ss Score
13.06
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
GCATCCCGTCAGCCGCATTGCTGACGCCAACAGTTCAAAACCCAGCTGCCCCTGCAGAGAAAACTCACATTTCTCCTTTGGAATCCATAGACAACCACCAAGAAAGGAAGTCTCCAGGGATTAAAAATCCAGGCAACAAAGCGAACGTCCAGGAACAGAGCCAGCCTGCGGCCACGACTCCTTCCATGCGTGAGGCTGGCGACACACAGCCGTCCACGTCCTTCCCCAGCCTGAAGACAGCCACGAGCTCCACGTGGTGCTGCCTGATGAGACAGAAGGCCCTGCACCTGCCGCAGAAGGACCAGAAAACCTCGGCCTACACTGACTGGACCGTGAGCGCCAGTGACCCCAACCCACTCGGCCTGCCGACCAAAGTGGCTCTTTCTCTCCTGAACTCCAAGCAGAAGACCGGAAAATCTCTGTACTGTCAAGCAATAACCACCCATTTCAAGTCAGACTTACTGGTCTATTCAAGCAAGTGGAAAAGCAACTTAAGCAAG
Seq A exon
AGAGCATTAGGTAATCAAAAGTCCACAGTAGTTGAATTCAGCAGTAAAGATGCCTCTGAAATTAACAGTGAGCAAGATAAAGAAAATTCCTTAATCAAAAGTGAACCAAGAAGAATTAAAATATTTGATGGAGG
Seq C2 exon
ATATAAATCAAATGAAGAGTATGTATATGTCCGAGGCAGGGGAAGAGGAAAGTACATTTGTGAAGAATGCGGAATCCGCTGTAAGAAACCTAGCATGTTAAAGAAACACATACGAACCCACACAGATGTCCGCCCCTACCACTGCACTTACTGTAACTTCTCCTTTAAGACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001252-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.799 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.4)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAAACCTCGGCCTACAC
R:
TCCCCTGCCTCGGACATATAC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development