MmuEX6058085 @ mm9
Exon Skipping
Gene
ENSMUSG00000021366 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:MGI Symbol;Acc:MGI:96100]
Coordinates
chr13:42249749-42259761:+
Coord C1 exon
chr13:42249749-42255687
Coord A exon
chr13:42258720-42258853
Coord C2 exon
chr13:42259586-42259761
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTTTCCCTTTCAGAGA
3' ss Score
12.41
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
TTAAAAACACCAAGGTGTCCACATCTCTGACTCCTACAGTGGGAAGTTTCCCTGCTCCATCGGAAAGTGCCTGTGTTTTGCCTTTGAAGTCTATAGACAACAACCAGGAAAAGGGGTCGCCAGGGGTTAGACATGAAGAGAACAAGGTCATCCAAGGGCAGAGGCCGCCTCTAGTGTCTGGTCTTTCATTGGTGAGCAGCTCAGACACTCAACAGCCGTCATTTCCCAGCCTCAAGACTGCAACTAGCTTTACATGGTGTTACCTGCTGAGACAGAAGGCATTGCCGTTGGCTCAGAATGACCAGAAAACTTCAGCCTATACGGGGTGGACAGTAAGCTCCAGTAACCCAAATCCACTTGGTTTGCCTACAAAAGTTGCTCTTTCTCTTCTTAATTCTAAACAGAAGACTGGAAAGTCACTGTATTGCCAAGCAATAACCACCCATTCAAAATCAGATTTAGTGGTCTATTCAAGCAAGTGGAAAAACAACTTAAGCAAG
Seq A exon
AGAGCATTAGGTAATCAAAAGGCCACAGTAGTTGAATTCAGCAATAAAGATGACTCTGAAATTAACAGTGAGCAAGATAAAGAAAATTCCTTAATCAAAAGTGAACCAAGAAGAATTAAAATATTTGACGGAGG
Seq C2 exon
ATACAAGTCAAATGAGGATTACGTGTATGTCCGAGGCAGGGGAAGAGGAAAGTACATTTGTGAAGAGTGTGGAATACGTTGTAAGAAGCCTAGTATGTTGAAGAAGCACATCCGAACCCACACAGATGTCCGCCCCTACCACTGCTCTTACTGTAACTTCTCCTTCAAGACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021366-'10-5,'10-4,12-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=0.289 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.4)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTGGCTCAGAATGACCAG
R:
CCTGCCTCGGACATACACGTA
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: