RnoEX0041985 @ rn6
Exon Skipping
Gene
ENSRNOG00000014460 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:RGD Symbol;Acc:727847]
Coordinates
chr17:22303043-22310174:-
Coord C1 exon
chr17:22307064-22310174
Coord A exon
chr17:22303931-22304064
Coord C2 exon
chr17:22303043-22303218
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTCCCTTTCAGAGA
3' ss Score
12.55
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
TTAAAAATACCAAGTTGTCCACGTCACTGACTCCTACAGTGGGAAGTTCACACATCCCATTGGAAAGTGCCTGTGTTTTGCCTTTGAAATCTAGAGACGACAACCAGGAAAAGGGGTCATCAGGGGTTCAAAATGAAGAGAACAAAGTCATCCAAGGGCAAAGGCAGCCTCCAATCCCTGGTCTCTCAGTGTTGAGCAGCTCAGACACTCAGCAGCCATCTTTCCCCAGCCTCAAGACTGCAACTAGCTTTACATGGTGTTACCTGCTGAGACAGAAGTCATTGCCCTTGGCTCAGAGTGACCAGAAAACGTCAGCCTATGCGGGGTGGACAGTGAGCCCCAGTAACCCCAATCCACTCGGTTTGCCCACAAAAGTTGCTCTTTCTCTTCTGAATTCTAAACAGAAGACAGGAAAGTCACTGTATTGCCAAGCAATAACCACCCATTCAAAGTCAGATTTAGTGGTCTATTCAAGCAAGTGGAAAAACAACTTAAGCAAG
Seq A exon
AGAGCATTAGGTAATCAAAAGGCCACAATAGTTGAATTCAGCAATAAAGATGACTCTGAAATTAACAGTGAGCAAGATAAAGAAAATTCCTTAATCAAAAGTGAACCAAGAAGAATTAAAATATTTGATGGAGG
Seq C2 exon
GTACAAGTCAAATGAGGACTATGTATATGTCCGAGGCAGGGGCAGAGGAAAGTACATTTGTGAAGAATGTGGAATCCGTTGTAAGAAACCCAGTATGTTAAAGAAGCACATCCGAACCCACACTGATGTTCGCCCCTACCATTGCACTTACTGCAACTTCTCCTTCAAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014460_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=0.283 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAGAAAACGTCAGCCT
R:
CCCCTGCCTCGGACATATACA
Band lengths:
245-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]