HsaEX0030049 @ hg38
Exon Skipping
Gene
ENSG00000095951 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr6:12119890-12130942:+
Coord C1 exon
chr6:12119890-12125870
Coord A exon
chr6:12129759-12129892
Coord C2 exon
chr6:12130767-12130942
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTTTCCTTTCAGAGA
3' ss Score
12.52
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
AAAACATCAAGTCATCCACATCATTAACTCTTACAGTTCGAAGTTCACCTGCTCCTTCAGAAAATACTCATATTTCTCCTTTGAAATGTACAGACAATAACCAAGAAAGGAAGTCTCCAGGGGTTAAAAATCAAGGTGACAAAGTGAACATCCAAGAGCAAAGTCAACAGCCAGTCACTTCTCTTTCATTGTTTAACATCAAGGACACCCAGCAGCTGGCTTTCCCTAGCCTGAAAACTACAACCAACTTTACATGGTGTTATCTCTTAAGGCAGAAGTCGTTGCATTTGCCTCAGAAGGACCAGAAAACTTCAGCCTATACTGATTGGACAGTAAGCGCCAGTAATCCAAATCCACTCGGTTTGCCCACAAAAGTTGCACTTGCTCTCCTTAATTCAAAACAGAACACTGGAAAATCACTATACTGTCAAGCAATAACTACCCATTCCAAGTCAGACTTATTGGTCTATTCAAGCAAGTGGAAAAGCAGCTTAAGCAAG
Seq A exon
AGAGCATTAGGTAATCAAAAGTCCACAGTAGTTGAATTCAGCAATAAAGATGCCTCTGAAATTAACAGTGAGCAAGATAAAGAAAATTCCTTAATCAAAAGTGAACCAAGAAGAATTAAAATATTTGATGGAGG
Seq C2 exon
ATATAAGTCAAATGAAGAGTATGTATATGTCCGAGGCAGGGGAAGAGGAAAATACATTTGTGAAGAATGTGGAATACGTTGTAAGAAACCTAGCATGTTAAAGAAACACATACGAACCCATACAGATGTCCGCCCCTACCACTGCACTTACTGTAACTTCTCCTTTAAGACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095951_MULTIEX1-7/9=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=0.231 C2=0.018
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.4)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCAGAAGGACCAGAAAAC
R:
CCCCTGCCTCGGACATATACA
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development