GgaEX1028731 @ galGal4
Exon Skipping
Gene
ENSGALG00000012739 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr2:62809714-62903565:-
Coord C1 exon
chr2:62903419-62903565
Coord A exon
chr2:62811196-62811329
Coord C2 exon
chr2:62809714-62809889
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATATCTCATTCTCTTTCAGCGA
3' ss Score
10.03
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
CATATGGATTAACTGACCCCTCTGACAAGTTTATGGAGCTGCCACCTCTCTGCTTGCTGTGCTTTTCATTTCTGGGAGGAGAAAGCGGTGTACGAGATTAGAGGAAAATGCCTCGGACGAAGCAGATACATCCCAGAAATCTCAGAG
Seq A exon
CGAGCGTTAAATAGGAAAAAAATAACTGCATCTGAATTCAGCAATAAGGAAAGCTCCGAGTCGAGCACTGAACACGATAAAGAAAATTCCTTTATCAAAAGCGAGCCAAGAAGGGTGAAAATCTTCGATGGAGG
Seq C2 exon
GTACAAATCAAATGAAGACTATGTGTATGTTCGGGGGAGAGGAAGAGGGAAATATATCTGTGAAGAATGTGGAATACGTTGCAAGAAGCCTAGTATGCTGAAGAAGCATATTCGCACACATACAGATGTCCGTCCTTATCATTGCAATTACTGCAACTTCTCCTTCAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739_MULTIEX2-5/5=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.453 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
ENSGALT00000020790fB8240
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCTCTCTGCTTGC
R:
ACGGACATCTGTATGTGTGCG
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]