DreEX0037664 @ danRer10
Exon Skipping
Gene
ENSDARG00000103658 | hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-070912-512]
Coordinates
chr19:3448536-3461679:-
Coord C1 exon
chr19:3461626-3461679
Coord A exon
chr19:3449500-3449636
Coord C2 exon
chr19:3448536-3448637
Length
137 bp
Sequences
Splice sites
3' ss Seq
CACTTCTTTTATCGCTTCAGGTT
3' ss Score
9.54
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
Exon sequences
Seq C1 exon
ATAAAATAGAAGAGGCACAGAAAGAGTTCAAAGACCCCAAAGGTGCACACAAAG
Seq A exon
GTTTTGATACAGCAAAGATCTGTGCCAAGTGAGAATAGTGGAAAAACAAAACCAGATACTCAACCTGTTAATCAGAAAGAGTCAGACAGAGACACTTCCAAATCGGAACCCCAGCGAGTGAAGATCTTTGATGGAGG
Seq C2 exon
GGAACCTTACCAAGCACATGAAGTCCAAAGCCCACAGCAAGAAGTGCATGGAAATGGGAGTCGCTGTGGGTATTATTGAGGACCAGGACGCAGAAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103658_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.848 C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
PF065247=NOA36=PU(0.1=0.0)
C2:
PF065247=NOA36=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATAGAAGAGGCACAGAAAGAGT
R:
CTGAGTCTTCTGCGTCCTGGT
Band lengths:
154-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]