HsaEX0030049 @ hg19
Exon Skipping
Gene
ENSG00000095951 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:4920]
Coordinates
chr6:12120123-12131175:+
Coord C1 exon
chr6:12120123-12126103
Coord A exon
chr6:12129992-12130125
Coord C2 exon
chr6:12131000-12131175
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTTTCCTTTCAGAGA
3' ss Score
12.52
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
AAAACATCAAGTCATCCACATCATTAACTCTTACAGTTCGAAGTTCACCTGCTCCTTCAGAAAATACTCATATTTCTCCTTTGAAATGTACAGACAATAACCAAGAAAGGAAGTCTCCAGGGGTTAAAAATCAAGGTGACAAAGTGAACATCCAAGAGCAAAGTCAACAGCCAGTCACTTCTCTTTCATTGTTTAACATCAAGGACACCCAGCAGCTGGCTTTCCCTAGCCTGAAAACTACAACCAACTTTACATGGTGTTATCTCTTAAGGCAGAAGTCGTTGCATTTGCCTCAGAAGGACCAGAAAACTTCAGCCTATACTGATTGGACAGTAAGCGCCAGTAATCCAAATCCACTCGGTTTGCCCACAAAAGTTGCACTTGCTCTCCTTAATTCAAAACAGAACACTGGAAAATCACTATACTGTCAAGCAATAACTACCCATTCCAAGTCAGACTTATTGGTCTATTCAAGCAAGTGGAAAAGCAGCTTAAGCAAG
Seq A exon
AGAGCATTAGGTAATCAAAAGTCCACAGTAGTTGAATTCAGCAATAAAGATGCCTCTGAAATTAACAGTGAGCAAGATAAAGAAAATTCCTTAATCAAAAGTGAACCAAGAAGAATTAAAATATTTGATGGAGG
Seq C2 exon
ATATAAGTCAAATGAAGAGTATGTATATGTCCGAGGCAGGGGAAGAGGAAAATACATTTGTGAAGAATGTGGAATACGTTGTAAGAAACCTAGCATGTTAAAGAAACACATACGAACCCATACAGATGTCCGCCCCTACCACTGCACTTACTGTAACTTCTCCTTTAAGACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095951-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=0.363 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.4)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCAGAAGGACCAGAAAAC
R:
CCCCTGCCTCGGACATATACA
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)