GgaEX1028731 @ galGal3
Exon Skipping
Gene
ENSGALG00000012739 | HIVEP1
Description
NA
Coordinates
chr2:63868384-63882243:-
Coord C1 exon
chr2:63876307-63882243
Coord A exon
chr2:63869866-63869999
Coord C2 exon
chr2:63868384-63868559
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATATCTCATTCTCTTTCAGCGA
3' ss Score
10.03
5' ss Seq
AGGGCAAGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
AAGACCTTAAGTCTTCAGCATCACCAGTGTTTGTAGTTAGAAAACCATCTGAACCATCTCCAGTGAGTAGTCAGAATTCTATTCCAAAGGCAGTAAACTGCAGTCAAGAAAGAAGGTCCCCAGGTAATAGTCATGAAAGTGAGCTAATCAGTAGCCAGGGCCAAGCAAAGCTACTGACTACACTAGCTGTGATGAATGCAGGAGAAATGCAGAGGTTGTCATTTCCAAGCCTCAAGACCTCAACAAGTTTTACCTGGTGTTATCTCTTGAAGAGGAAACCATTACACCTGCTGCAAAATGATCAGAAGATTTCAGCCTATTCTACGTGGACCATTAGTCCCAGCAATCCCAATCCTCTAGGCTTGTCAACAAAGGTGGCTCTTTCTCTCCTCAACTCGAAACAGAAAGTGGAAAAACCGCTATACACTCAAGCAAGAACTACTCATCCCAGGTCGGATATACTGGTCTATTCAAGCAAGTGGAAGAACAGCTTAACCAAG
Seq A exon
CGAGCGTTAAATAGGAAAAAAATAACTGCATCTGAATTCAGCAATAAGGAAAGCTCCGAGTCGAGCACTGAACACGATAAAGAAAATTCCTTTATCAAAAGCGAGCCAAGAAGGGTGAAAATCTTCGATGGAGG
Seq C2 exon
GTACAAATCAAATGAAGACTATGTGTATGTTCGGGGGAGAGGAAGAGGGAAATATATCTGTGAAGAATGTGGAATACGTTGCAAGAAGCCTAGTATGCTGAAGAAGCATATTCGCACACATACAGATGTCCGTCCTTATCATTGCAATTACTGCAACTTCTCCTTCAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=0.444 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.4)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGCAATCCCAATCCTCT
R:
AGGCTTCTTGCAACGTATTCCA
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]