BtaEX0018146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001354 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr11:103930423-103932521:-
Coord C1 exon
chr11:103932398-103932521
Coord A exon
chr11:103931104-103931201
Coord C2 exon
chr11:103930423-103930547
Length
98 bp
Sequences
Splice sites
3' ss Seq
CAGAAGCTGCCCTTCCGCAGGAG
3' ss Score
4.57
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGCTACCTGGAGGGGAGCCTGCTGGCAACTGGGGCCCTGATGGGGGCAGATGAGCTGGCCCGTTACTTCCCGGACCGGAGCGTGGCCCTGTTCGTGGCCACGTGGAACATGCAGGGCCAGAAG
Seq A exon
GAGCTGCCCCCGAACCTGGACGAGCTCCTGCTGCCGGCCGAGGCTGACCTGGCCCAGGACCTGTATGTTGTGGGCGTCCAGGAGGGCTGCTCCGACAG
Seq C2 exon
GCGGGAGTGGGAGGCGCGGCTACAGGAGACGCTGGGCCCGCATTACGTCATGCTGTACTCGGCAGCCCACGGCGCGCTCTACATGGCTGTGCTCATCCGCAGGGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001354-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PU(2.8=19.0)
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCTGGCCCGTTACTTC
R:
ATGAGCACAGCCATGTAGAGC
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development