GgaEX0002399 @ galGal3
Exon Skipping
Gene
ENSGALG00000001964 | INPP5E
Description
NA
Coordinates
chr17:8566097-8567772:+
Coord C1 exon
chr17:8566097-8566220
Coord A exon
chr17:8566932-8567029
Coord C2 exon
chr17:8567648-8567772
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTTTTTAATGACAGGAA
3' ss Score
6.93
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
AAGCTATTTGGAAGGCAGCCTTCTGGCAAGTGGTGCCTTACTGGGAGCAGAAGAACTCAGCAGATATTTCCCTGATCGGAATGTGGGCATTTTTGTGGCCACCTGGAACATGCAAGGCCAGAAG
Seq A exon
GAACTTCCAGAGAATCTGGATGACTTCTTGTTGCCAACAGATCCTGACTATGCCCAGGACATGTATGTCATTGGGGTTCAAGAAGGCTGTCCAGACAG
Seq C2 exon
AAGAGAGTGGGAAATCCGCCTCCAGGAGACGCTGGGCCCCCACTACGTCATGCTCTACTCTGCTGCGCACGGAGTGCTCTACATGTCAGTCTTCATTCGAAGGGACCTGATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PU(2.8=19.0)
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATCGGAATGTGGGCATT
R:
ACCAGATCAGGTCCCTTCGAA
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event