MmuEX6099727 @ mm9
Exon Skipping
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26256406-26257743:-
Coord C1 exon
chr2:26257620-26257743
Coord A exon
chr2:26257121-26257218
Coord C2 exon
chr2:26256406-26256530
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGGTCTTCACCACAGGAG
3' ss Score
8.62
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCTATCTGGAGGGAAGTCTTCTGGCCAGTGGGGCCCTGCTAGGAGCAGAAGAGCTGGCCAGGTACTTCCCAGACCGAAACATGGCTCTCTTCGTGGCTACCTGGAACATGCAGGGCCAGAAG
Seq A exon
GAGCTCCCAGCGAGCCTGGATGAGTTTCTGCTCCCCACCGAGGCTGACTACACTCAGGACCTGTATGTCATTGGAATTCAGGAGGGCTGCTCTGACAG
Seq C2 exon
GCGGGAGTGGGAGACACGCCTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATCCGTAGGGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.023
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PU(2.8=19.0)
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCGAAACATGGCTCTC
R:
AACCAGATGAGGTCCCTACGG
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: