GgaEX0002399 @ galGal4
Exon Skipping
Gene
ENSGALG00000001964 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr17:7876996-7878671:+
Coord C1 exon
chr17:7876996-7877119
Coord A exon
chr17:7877831-7877928
Coord C2 exon
chr17:7878547-7878671
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTTTTTAATGACAGGAA
3' ss Score
6.93
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
AAGCTATTTGGAAGGCAGCCTTCTGGCAAGTGGTGCCTTACTGGGAGCAGAAGAACTCAGCAGATATTTCCCTGATCGGAATGTGGGCATTTTTGTGGCCACCTGGAACATGCAAGGCCAGAAG
Seq A exon
GAACTTCCAGAGAATCTGGATGACTTCTTGTTGCCAACAGATCCTGACTATGCCCAGGACATGTATGTCATTGGGGTTCAAGAAGGCTGTCCAGACAG
Seq C2 exon
AAGAGAGTGGGAAATCCGCCTCCAGGAGACGCTGGGCCCCCACTACGTCATGCTCTACTCTGCTGCGCACGGAGTGCTCTACATGTCAGTCTTCATTCGAAGGGACCTGATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PU(2.8=19.0)
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATCGGAATGTGGGCATT
R:
ACCAGATCAGGTCCCTTCGAA
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]