HsaEX0031783 @ hg38
Exon Skipping
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr9:136433155-136434863:-
Coord C1 exon
chr9:136434740-136434863
Coord A exon
chr9:136434037-136434134
Coord C2 exon
chr9:136433155-136433279
Length
98 bp
Sequences
Splice sites
3' ss Seq
CACATGCTCCCTCCTTCCAGGAG
3' ss Score
10.76
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGTTACCTGGAGGGCAGCCTCCTGGCCAGCGGGGCCCTGTTGGGGGCGGATGAGCTGGCCCGCTACTTCCCAGACCGGAACGTGGCACTCTTCGTGGCCACCTGGAACATGCAGGGCCAGAAG
Seq A exon
GAGCTCCCGCCCAGCCTGGACGAGTTCCTGCTCCCAGCCGAGGCCGACTATGCCCAGGACCTGTATGTCATCGGGGTCCAGGAGGGCTGTTCTGACAG
Seq C2 exon
GCGGGAGTGGGAGACTCGTCTGCAGGAGACGCTGGGCCCGCACTATGTGCTGCTGTCCTCGGCGGCCCACGGCGTGCTCTACATGTCGCTCTTCATCCGCAGGGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PU(2.8=19.0)
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGGAGGGCAGCCTC
R:
CGAGGACAGCAGCACATAGTG
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development