RnoEX6015980 @ rn6
Exon Skipping
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3847088-3848481:-
Coord C1 exon
chr3:3848358-3848481
Coord A exon
chr3:3847829-3847926
Coord C2 exon
chr3:3847088-3847212
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGGTCCTCACTGCAGGAG
3' ss Score
9.28
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCTATCTGGAGGGAAGTCTTCTGGCCAGTGGGGCCCTGCTAGGAGCAGACGAGCTGGCCAGGTACTTCCCAGACCGAAACATGGCTCTTTTCGTGGCTACCTGGAACATGCAGGGCCAGAAG
Seq A exon
GAGCTTCCGGCAAGCCTGGATGAGTTTCTGCTTCCCACCGAGGCTGACTACACACAGGACCTGTATGTCATTGGCGTTCAGGAGGGCTGCTCTGACAG
Seq C2 exon
GCGGGAATGGGAGACACGCTTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATCCGTAGGGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PU(2.8=19.0)
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTACTTCCCAGACCGAA
R:
AACCAGATGAGGTCCCTACGG
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]