MmuEX6099727 @ mm10
Exon Skipping
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26400886-26402223:-
Coord C1 exon
chr2:26402100-26402223
Coord A exon
chr2:26401601-26401698
Coord C2 exon
chr2:26400886-26401010
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGGTCTTCACCACAGGAG
3' ss Score
8.62
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCTATCTGGAGGGAAGTCTTCTGGCCAGTGGGGCCCTGCTAGGAGCAGAAGAGCTGGCCAGGTACTTCCCAGACCGAAACATGGCTCTCTTCGTGGCTACCTGGAACATGCAGGGCCAGAAG
Seq A exon
GAGCTCCCAGCGAGCCTGGATGAGTTTCTGCTCCCCACCGAGGCTGACTACACTCAGGACCTGTATGTCATTGGAATTCAGGAGGGCTGCTCTGACAG
Seq C2 exon
GCGGGAGTGGGAGACACGCCTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATCCGTAGGGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925-'5-7,'5-5,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.023
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=PU(2.8=19.0)
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCGAAACATGGCTCTC
R:
AACCAGATGAGGTCCCTACGG
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types