DreEX0039471 @ danRer10
Exon Skipping
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64378366-64393110:-
Coord C1 exon
chr5:64392483-64393110
Coord A exon
chr5:64385792-64385889
Coord C2 exon
chr5:64378366-64379227
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTTTCTTGCTCTCAGGGC
3' ss Score
10.36
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
TTGAGGAACAGCCAGGAGAGTCTCACGGATCCGGGAGAGACGGGTTCTTCTACTGATTCTCTCAAAGATGTTGCCTCAGCAAACGGTCAAACCCTTGCATCTCGACGTCCTCTCGATCTCCAGCACATGGAGATGCCACCGTTCAGGATTAGGACCGGGAGCTTGTCCGAGACGGATGTGTCTCCTCATGACCTTTGTGATCCGAATAAAGAGCGCATGAAACCATCCAGAATCGTTCTGTCTCCTCTGCAGCCCACAGGCACGTATCCTCTTCTGGAGAACAGCACCGCCTCTGCGTCTTTAAGAACAACTAATAGGATTGACAGGGATTGTTTGGATTACGGTGTGGTGGGGAGAAGAGGGCGGTCGGAGAGGCTTCACAGGAATCTGAGCGATAGCCGGCTGTTGGACACCATGGTGTCCGACAATACATCTGTCCATTCCATGAAGTCCACATATAGCGTTCTGAACCCCATCAGACCTCGGGATGTGAGGAACAG
Seq A exon
GGCCTTCCATACAATTTAGATGATCTGCTGCTGCCAACTGACACTGACTTTGCACAGGACGTCTATGTTATAGGGGTTCAGGAGGGCTGTCCTGATAG
Seq C2 exon
CATTCCTCTGGGCGCTGGCCTTTTCGACAGGAGTCTGTACCTCGAAGGAATCCGACGGAGAATCACCAGAGAGCTGAAAAAGAGAGAGGCGGTCATGAAAAACCAGAACAACAGCACAGTCTGCTCCATATCCTGATCCGGGACCAGTGTGCGACAGCCATAAGGTGCTAAAACTGATCATTTTCAAACACGCCTGGTGACTCGGAAAGCTGGACTTTCAGGACCGAGGGATAACTCGGTTTACTGTCACTTAAGTGCACAGCCCGCGGACCAAAGCACTACAGCTGGTGTTGGATTAAATATATAAAAACATGACTTTATTCCTATGATTTAATCTTTAAATTATACTGACCAGAGTAAAGGAAGTTAACAGTACTGTACATTCACTATTCCTAATGCGTTTCTTTGTTTTACTTCATTTAACTTGCAAGCTGAAACAGTCTGTGCTGTGTATGGTTTCAATGTATAGCATCTCATGGCCTTGTTAAAGGGACAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926_MULTIEX1-2/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.752 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
PF0337218=Exo_endo_phos=FE(11.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGAGGCTTCACAGGAAT
R:
GACTCCTGTCGAAAAGGCCAG
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]