BtaEX0021016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107185080-107192669:-
Coord C1 exon
chr3:107192552-107192669
Coord A exon
chr3:107191700-107191768
Coord C2 exon
chr3:107185080-107185291
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTATGTATTTTTTATTCTAGTGC
3' ss Score
8.29
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
Exon sequences
Seq C1 exon
TTCGGGGACTCCCAGCAGCTGCGGCTGGTCCGCATCCTGCGCAGCACCGTGATGGTCCGCGTTGGTGGAGGGTGGATGGCCCTGGATGAGTTCCTCGTGAAAAACGACCCCTGCCGAG
Seq A exon
TGCACCATCCTGGGAGTAAAATAAAGCGCTCTGATTCCAGCTCCTCGATTTCCAGTCAGTCTCCCATAG
Seq C2 exon
CTCGAGGTAGAACTAACATCGAACTTAGAGAGAAATTCATCCTCCCTGAGGGGGCATCCCAGGGCATGACCCCTTTCCGGTCCCGGGGTCGAAGGTCCAAACCATCTTCCCGCGCAGCCTCCCCTACTCGCTCCAGCTCAAGTGCTAGTCAGAGTAACCACAGCTGTACATCCATGCCGTCTTCTCCAGCCACCCCAGCCAGTGGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.917 C2=0.859
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.4=100)
A:
PF0218712=GAS2=PD(2.5=8.3)
C2:
PF0218712=GAS2=PD(2.5=2.8)
Main Inclusion Isoform:
ENSBTAT00000033270fB4008
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAACGACCCCTGCCGAG
R:
GACTAGCACTTGAGCTGGAGC
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development