RnoEX0051766 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141044788-141050300:-
Coord C1 exon
chr5:141050183-141050300
Coord A exon
chr5:141049417-141049485
Coord C2 exon
chr5:141044788-141044999
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTACATCTTTTTTATTCCAGTTC
3' ss Score
8.31
5' ss Seq
TAGGTTGGC
5' ss Score
2.04
Exon sequences
Seq C1 exon
TTTGGAGATTCTCAGCAGTTGCGGCTGGTCCGTATTCTGCGCAGCACTGTGATGGTCCGCGTTGGTGGAGGATGGATGGCCCTGGATGAGTTTCTAGTGAAAAACGATCCCTGCCGAG
Seq A exon
TTCATCATCCTGGGAGTAAAATAAAGCGCTCTGATTCCAGCTCTTCAATTTCCAGTCAGTCTCCCATAG
Seq C2 exon
CACGGGGCAGAACTAACATAGAACTTAGAGAGAAATTCATCCTGCCAGAAGGGGCATCTCAGGGGATGACTCCATTCCGGTCACGGGGTCGAAGATCCAAACCATCTTCCCGGGCAGCTTCTCCCACCCGCTCCAGCTCAAGTGCTAGTCAGAGTAACCACAGCTGTACGTCCATGCCTTCTTCTCCAGCCACCCCAGCCAGTGGGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.917 C2=0.856
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(53.4=100)
A:
PF0218712=GAS2=PD(2.5=8.3)
C2:
PF0218712=GAS2=PD(2.7=2.8)
Main Inclusion Isoform:
ENSRNOT00000084109fB8243
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAACGATCCCTGCCGAG
R:
GACTAGCACTTGAGCTGGAGC
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]