BtaEX0021019 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107271811-107275977:-
Coord C1 exon
chr3:107275860-107275977
Coord A exon
chr3:107272706-107272768
Coord C2 exon
chr3:107271811-107272052
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTCCTTCTGCTCAGGTT
3' ss Score
10.86
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATCTCCTAGATGACTGGACAAGTAAGGGGACTTTGGTAGAGGAAATCAATTGTAAAGGTACTTCTTTAGAAAATCTCATCATGGAGATCACAGCACCTGATTCTCAAGCCAAGACCG
Seq A exon
GTTCCATACTGCCCTCTGTAGGAAGCTCTGTAGGCAGTGTAAACGGATACCACACCTGCAAAG
Seq C2 exon
ATCTGACGGAAATCCAGTGTGACATGTCAGATATAAACTTGAAATATGAGAAACTTGGGGGCGTGCTTCGGGAACGGCAGGAAAGCCTTCAGGCTGTCCTGAGCAGAATGCAAGAAGTTCAGAAGGAGGCAAGTTCGGTGCTGCAGTGGCTGGAATCAAAAGAGGAAGTCCTGAAAGGCATGGACACCTCTTCATCTCCAACCAAGACAGAGACAGTGAGAGCCCAGGCTGAGTCTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.136 C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(41.8=56.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACCTGATTCTCAAGCC
R:
TTGCATTCTGCTCAGGACAGC
Band lengths:
141-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development