RnoEX0051772 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141125918-141130190:-
Coord C1 exon
chr5:141130073-141130190
Coord A exon
chr5:141126955-141127017
Coord C2 exon
chr5:141125918-141126159
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGTCCTTCTGCTCAGGTT
3' ss Score
10.46
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTCTCCTAGATGACTGGGCAGGTAAAGGAGTGCTGGTGGAGGAGATCAACACCAAGGGCACTGCCTTAGAAAGTCTCATCATGGACATCACAGCGCCTGATTCCCAGGCTAAGACAG
Seq A exon
GTTCCGTACTACCCTCTGTAGGAAGCTCTGTAGGCAGTGTAAACGGATACCACACCTGCAAAG
Seq C2 exon
ATCTTACAGAGATTCAATGTGACATGTCTGATGTAAATTCCAAGTATGATAAACTGGGAGACGCGCTGCGGGAACGCCAGGAAAGCCTTCAGACTGTCCTCAGCAGAATGGAGGAGGTCCAGAAGGAGGCGAGCTCTGTATTACAGTGGTTAGAATCAAAAGAAGAAGTTCTGAAAGGCATGGATGCCTCTTTGTCTCCAACCAAGACAGAAACAGTAAAAGCCCAAGCAGAATCTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.273 C2=0.292
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(33.9=100)
A:
NO
C2:
PF0043516=Spectrin=PD(27.0=38.3),PF0043516=Spectrin=PU(41.8=56.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATGGACATCACAGCGC
R:
CAGTCTGAAGGCTTTCCTGGC
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]