GgaEX0004829 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5354123-5356377:+
Coord C1 exon
chr23:5354123-5354240
Coord A exon
chr23:5355445-5355507
Coord C2 exon
chr23:5356136-5356377
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTCCCCTCCGCTCAGGTT
3' ss Score
9.98
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGCTGCTGGAGGAGTGGTCAGGGAAGGGCCCGCAGGTGGAGGAGCTCAGCCACAGGGGGACCCTCCTGGAGAACCTGATTGTGGAGATCACAGCCCCTGACAGTCAGACCAAGGCGG
Seq A exon
GTTCAGTGCTGCCCGCAGTGGGAGGGCCTCTGGGCAGCGTGAACGGATTCCACACTTGCAAAG
Seq C2 exon
ATCTGACCGAGATCCAATGCGATGTGTCGGACGTCAGCCGGCAGTATGAGGGTCTCGGCGCGGCGCTGCGGGAGCGCCTGCAGCAGCTCTCGGCCATGCTGGAGAGGATGCAAGCGGTGCAGGAGGAGGCGGGCGCTGTGCTGCAGTGGTTGGAGTCAAAGGAGCGGACGCTGTCGGAGCTGGAAGCCTCCTCCTCACCCACCAAGACGGAGACCATGCGGGCTCAGGCCGAGCACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'81-90,'81-87,82-90
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.318 C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(41.8=56.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACAGCCCCTGACAGTC
R:
CTTGCATCCTCTCCAGCATGG
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]