Special

BtaEX0023077 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41639810-41640449:-
Coord C1 exon
chr29:41640350-41640449
Coord A exon
chr29:41639988-41640176
Coord C2 exon
chr29:41639810-41639884
Length
189 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCACCTTTTCTGTAGTTT
3' ss Score
6.21
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
AGCTGTGGGGACCTTTGCAAGAGCCCTAGATTGCAGCAGTTCCATTCGGCAGCCAAGCCTGCACATGAGTGCAGCCGCTGCCTCCCGAGATATCACCCTG
Seq A exon
TTTCATGCAATGGATACGTTGCAGAGGAATGGCTATGATCTGGCTAAGGCCATGTCAACCCTGGTGCCCCAGGGCGGGCCAGTGTTGTGTCGGGATGAGATGGAGGAATGGTCAGCCTCAGAGGCTATGCTGTTTGAAGAGGCCCTGGAGAAGTATGGGAAGGATTTCAATGATATTCGCCAGGACTTT
Seq C2 exon
CTACCCTGGAAGTCACTGGCCAGCATAGTTCAGTTTTATTACATGTGGAAAACCACAGACCGATACATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (disopred):
  C1=0.353 A=0.000 C2=0.040
Domain overlap (PFAM):

C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTTTGCAAGAGCCCTAG
R:
TGTTGAATGTATCGGTCTGTGGT
Band lengths:
166-355
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development