HsaEX0040391 @ hg19
Exon Skipping
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family, member 2 [Source:HGNC Symbol;Acc:7411]
Coordinates
chr11:62363930-62364887:-
Coord C1 exon
chr11:62364788-62364887
Coord A exon
chr11:62364109-62364297
Coord C2 exon
chr11:62363930-62364004
Length
189 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCATCTTCCCCATAGTTT
3' ss Score
8.69
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
AGCTGTGGGAACCTTTGCAAGAGCCCTAGATTGTAGCAGCTCCATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCCTCCCGAGATATCACTCTG
Seq A exon
TTTCACGCCATGGATACCTTGCAAAGGAACGGCTACGACCTGGCTAAGGCCATGTCGACCCTGGTACCCCAGGGAGGCCCGGTGCTGTGTCGGGATGAGATGGAGGAATGGTCAGCCTCAGAGGCCATGCTATTTGAGGAGGCCCTAGAGAAGTATGGGAAGGACTTCAATGATATTCGCCAGGATTTT
Seq C2 exon
CTACCCTGGAAGTCACTTGCCAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.539 A=0.138 C2=0.160
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(10.7=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTTTGCAAGAGCCCTA
R:
TGCTGAATATACCGGTCTGTGG
Band lengths:
167-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)