HsaEX0040391 @ hg38
Exon Skipping
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family member 2 [Source:HGNC Symbol;Acc:HGNC:7411]
Coordinates
chr11:62596458-62597415:-
Coord C1 exon
chr11:62597316-62597415
Coord A exon
chr11:62596637-62596825
Coord C2 exon
chr11:62596458-62596532
Length
189 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCATCTTCCCCATAGTTT
3' ss Score
8.69
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
AGCTGTGGGAACCTTTGCAAGAGCCCTAGATTGTAGCAGCTCCATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCCTCCCGAGATATCACTCTG
Seq A exon
TTTCACGCCATGGATACCTTGCAAAGGAACGGCTACGACCTGGCTAAGGCCATGTCGACCCTGGTACCCCAGGGAGGCCCGGTGCTGTGTCGGGATGAGATGGAGGAATGGTCAGCCTCAGAGGCCATGCTATTTGAGGAGGCCCTAGAGAAGTATGGGAAGGACTTCAATGATATTCGCCAGGATTTT
Seq C2 exon
CTACCCTGGAAGTCACTTGCCAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480-'21-19,'21-17,23-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.539 A=0.138 C2=0.160
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTTTGCAAGAGCCCTA
R:
TGCTGAATATACCGGTCTGTGG
Band lengths:
167-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development