DreEX0047696 @ danRer10
Exon Skipping
Gene
ENSDARG00000013031 | mta2
Description
metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
Coordinates
chr7:17681130-17681659:+
Coord C1 exon
chr7:17681130-17681229
Coord A exon
chr7:17681321-17681509
Coord C2 exon
chr7:17681585-17681659
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCTGTCTGCTCCTAGTTC
3' ss Score
10.12
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GGCTGTTGGAACATTTGCACGTGCACTAGACTGCAGCAGTTCCATCCGCCAGCCTAGTCTGCACATGAGCGCAGCGGCAGCATCTAGAGACATCACACTG
Seq A exon
TTCCATGCTATGGACACTCTCCAGAAGAACGGCTACGACCTCGCCAAGGCCATGTCGACGCTGGTGCCACAGGGGGGCCCAGTGCTGTGCCGGGACGAGATGGAAGAGTGGAGCGCTTCTGAAGCCATGCTCTTCGAGGAGGCTCTGGAGAAATACGGCAAAGACTTCAATGACATTCGCCAAGACTTT
Seq C2 exon
TTACCCTGGAAGTCGTTAGCTAGTGTGGTCCAGTTCTACTACATGTGGAAGACTACTGATCGTTATATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013031-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTTGGAACATTTGCACG
R:
TGCTGGATATAACGATCAGTAGTCT
Band lengths:
174-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]